Browsing Moleküler Biyoloji ve Genetik Bölümü Makale Koleksiyonu by Author "bd4b98a5-a938-4763-93c8-f33e25485e08"
Now showing items 1-12 of 12
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A novel, conserved and possibly functional motif “WHWGHTW” in mitochondrial transcription across Bilateria
Aydemir, Merve Nur; Aydemir, Habeş Bilal; Budak, Mahir; Kızıltepe, Birsel; Çelebi, Melissa Şafak; Korkmaz, Ertan Mahir; Başıbüyükk, Hasan Hüseyin (2023)The animal mitogenomes which undergone a reductive evolution has an obvious loss of coding capacity compared to their known closest relatives, but it has not yet been fully investigated why and how the intergenic regions ... -
A novel, conserved and possibly functional motif “WHWGHTW” in mitochondrial transcription across Bilateria
Aydemir, Merve Nur; Aydemir, Habeş Bilal; Budak, Mahir; Kızıltepe, Birsel; Çelebi, Melissa; Korkmaz, Ertan Mahir; Başıbüyük, Hasan Hüseyin (2023)The animal mitogenomes which undergone a reductive evolution has an obvious loss of coding capacity compared to their known closest relatives, but it has not yet been fully investigated why and how the intergenic regions ... -
Characterization and taxonomic utility of ITS2 in Dolerus Panzer, 1801 (Hymenoptera: Tenthredinidae)
Gülmez, Mehmet; Budak, Mahir; Korkmaz, Ertan Mahir,; Hastaoğlu Örgen, Sevda; Başıbüyük, Hasan Hüseyin (2022)The widespread use of ITS2 as a potential marker in insects has accelerated species-level phylogenetic studies. Reliable and quality data can be obtained thanks to the features such as rapid evolution and secondary structure ... -
Identification of odorant receptor protein genes in two Cephid stem borers (Hymenoptera: Cephidae) by high-throughput sequencing
Budak, Mahir (2023)Insects are well adapted organisms to the terrestrial life on Earth. The evolution of the odorant receptor family is one of the causes underpinning this remarkable adaptation. Odorant receptors (ORs) sense aromas in the ... -
Mitochondrial genome of Poecilimon cretensis (Orthoptera: Tettigoniidae: Phaneropterinae): Strong phylogenetic signals in gene overlapping regions.
We report the complete mitochondrial genome of the Cretan bush cricket Poecilimon cretensis. The mitogenome consists of 13 protein-coding regions, 22 tRNAs, two rRNAs, and one control region. The length of mitogenome in ... -
Mitochondrial Phylogenomics of Tenthredinidae (Hymenoptera: Tenthredinoidea) Supports the Monophyly of Megabelesesinae as a Subfamily
Niu, Gengyun; Jiang, Sijia; Doğan, Özgül; Korkmaz, Ertan.Mahir; Budak, Mahir; Wu, Duo; Wei,Meicai (Insects, 26/05/2021)Tenthredinidae represents one of the external feeders of the most diverse superfamily, Tenthredinoidea, with diverse host plant utilization. In this study, four complete mitochondrial genomes (mitogenomes), those of Cladiucha ... -
Phylogenomic Analyses of the Tenthredinoidea Support Familial Rank of Athaliidae (Insecta, Tenthredinoidea)
Gengyun, Niu; Budak, Mahir; Korkmaz, Ertan Mahir; Doğan, Özgül; Nel, André; Wan,Siying; Cai, Chenyang; Jouault, Corentin; Li, Min; Wei, Meicai (21.09.2022)The systematic status of the genus Athalia and related genera is a perennial controversy in sawfly taxonomy. Several authors have hypothesized that the placement of Athalia within the Tenthredinidae is artificial, but ... -
Phylogenomic Analyses of the Tenthredinoidea Support the Familial Rank of Athaliidae (Insecta, Tenthredinoidea)
Niu, Gengyun; Budak, Mahir; Korkmaz, Ertan Mahir; Doğan, Özgül; Nel, André; Wan, Siying; Cai, Chenyang; Jouault, Corentin; Li, Min; Wei, Meicai (MDPI, 2022)The systematic status of the genus Athalia and related genera is a perennial controversy in sawfly taxonomy. Several authors have hypothesized that the placement of Athalia within the Tenthredinidae is artificial, but no ... -
The complete mitochondrial genome of Talpa martinorum (Mammalia: Talpidae), a mole species endemic to Thrace: genome content and phylogenetic considerations
Demirtaş, Sadık; Budak, Mahir; Korkmaz, Ertan M.; Searle, Jeremy B.; Bilton, David T.; Gündüz, İslam (Springer, 2022)The complete mitogenome sequence of Talpa martinorum, a recently described Balkan endemic mole, was assembled from next generation sequence data. The mitogenome is similar to that of the three other Talpa species sequenced ... -
The complete mitochondrial genome sequence of Pachycephus smyrnensis Stein, 1876 (Hymenoptera: Cephidae) with phylogenetic analysis
Liu, Mengmeng; Xu, Min; Zejian, Li; Budak, Mahir; Wei, Meicai; Liu, Lin (Taylor \& Francis, 2023)The complete mitochondrial genome of Pachycephus smyrnensis Stein, 1876 collected from Sivas, Turkey, is described. The circled genome is 20,393 bp in length and contains a typical set of 37 genes. The missing control ... -
Trichoderma atroviride suppresses Fusarium graminearum by altering primary and secondary metabolite biosynthesis profiling
The use of Trichoderma spp. offers an ecologically friendly tool for the struggle with mycotoxigenic Fusarium spp. Here, the alterations in transcriptome level were investigated in 6‐day‐old Fusarium graminearum cultures ... -
Trichoderma atroviride suppresses Fusarium graminearum by altering primary and secondary metabolite biosynthesis profiling
Özkale, Evrim; Yörük, Emre; Budak, Mahir; Korkmaz, Ertan Mahir (Mayıs 2023)The use of Trichoderma spp. offers an ecologically friendly tool for the struggle with mycotoxigenic Fusarium spp. Here, the alterations in transcriptome level were investigated in 6-day- old Fusarium graminearum cultures ...