DETECTION AND FIRST MOLECULAR CHARACTERISATION OF THREE PICORNAVIRUSES FROM DIARRHOEIC CALVES IN TURKEY

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dc.authoridISIDAN, Hakan/0000-0002-5080-1936
dc.authoridSozdutmaz, Ibrahim/0000-0002-3712-7991
dc.authoridIREHAN, BUNYAMIN/0000-0002-1745-2535
dc.authoridATASOY, Mustafa Ozan/0000-0003-0096-6297
dc.contributor.authorIsidan, Hakan
dc.contributor.authorTuran, Turhan
dc.contributor.authorAtasoy, Mustafa Ozan
dc.contributor.authorSozdutmaz, Ibrahim
dc.contributor.authorIrehan, Bunyamin
dc.date.accessioned2024-10-26T18:07:13Z
dc.date.available2024-10-26T18:07:13Z
dc.date.issued2019
dc.departmentSivas Cumhuriyet Üniversitesi
dc.description.abstractThe involvement of picornaviruses in calf diarrhoea was evaluated by the analysis of 127 faecal samples collected from diarrhoeic calves during 2014-2016. Virus detections were carried out by PCR using generic or specific primer pairs. One-third of the faecal samples (33.86%) were found to be positive for one or more of the studied viruses. Bovine kobuvirus was detected in 22.83%, bovine hungarovirus in 11.02%, while bovine enterovirus 1 in 5.51% of the samples. The sequences of the PCR products indicated the existence of novel variants in all the three virus species. When comparing the partial sequences, the nucleotide sequence identities between our newly detected viruses and those previously deposited to the GenBank ranged between 76 and 99%. Phylogenetic analyses revealed a novel lineage within the species Hunnivirus A. Our findings suggest that these viruses should be regarded as possible aetiological agents of calf diarrhoea. Based on the newly determined sequences, we designed and tested a new generic PCR primer set for the more reliable detection of bovine hungaroviruses. This is the first report on the molecular detection of the presence of bovine hungarovirus, bovine kobuvirus and bovine enterovirus 1 in the faecal samples of diarrhoeic calves in Turkey.
dc.description.sponsorshipCumhuriyet University Scientific Research Project Foundation (CUBAP) [VET-029]
dc.description.sponsorshipThis research was supported by the Cumhuriyet University Scientific Research Project Foundation (CUBAP) project no: VET-029.
dc.identifier.doi10.1556/004.2019.046
dc.identifier.endpage476
dc.identifier.issn0236-6290
dc.identifier.issn1588-2705
dc.identifier.issue3
dc.identifier.pmid31549549
dc.identifier.scopus2-s2.0-85072570652
dc.identifier.scopusqualityQ2
dc.identifier.startpage463
dc.identifier.urihttps://doi.org/10.1556/004.2019.046
dc.identifier.urihttps://hdl.handle.net/20.500.12418/29375
dc.identifier.volume67
dc.identifier.wosWOS:000499679200014
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherAkademiai Kiado Zrt
dc.relation.ispartofActa Veterinaria Hungarica
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectBovine hungarovirus
dc.subjectbovine kobuvirus
dc.subjectbovine enterovirus 1
dc.subjectdiarrhoea
dc.subjectcalf
dc.subjectTurkey
dc.titleDETECTION AND FIRST MOLECULAR CHARACTERISATION OF THREE PICORNAVIRUSES FROM DIARRHOEIC CALVES IN TURKEY
dc.typeArticle

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