Mitogenome evolution in Trichoderma afroharzianum strains: for a better understanding of distinguishing genus

Basit Öğe Kaydı
dc.authoridOZKALE, EVRIM/0000-0002-1707-9777
dc.authoridDOGAN, Ozgul/0000-0003-0182-8654
dc.authoridKorkmaz, Ertan Mahir/0000-0003-0699-1354
dc.contributor.authorOzkale, Evrim
dc.contributor.authorDogan, Oezguel
dc.contributor.authorBudak, Mahir
dc.contributor.authorKorkmaz, Ertan Mahir
dc.date.accessioned2024-10-26T18:07:56Z
dc.date.available2024-10-26T18:07:56Z
dc.date.issued2024
dc.departmentSivas Cumhuriyet Üniversitesi
dc.description.abstractTrichoderma afroharzianum (Hypocreales) is known as an important mycoparasite and biocontrol fungus and feeds on fungal material by parasitizing other fungi. Recent studies indicate that this species is also an ear rot pathogen in Europe. Here, the complete mitochondrial genome of three T. afroharzianum strains was sequenced using next-generation sequencing and comparatively characterized by the reported Trichoderma mitogenomes. T. afroharzianum mitogenomes were varying between 29 511 bp and 29 517 bp in length, with an average A + T content of 72.32%. These mitogenomes contain 14 core protein coding genes (PCGs), 22 tRNAs, two rRNAs, one gene encoding the ribosomal protein S3, and three or four genes including conserved domains for the homing endonucleases (HEGs; GIY-YIG type and LAGLIDADG type). All PCGs are initiated by ATG codons, except for atp8, and all are terminated with TAA. A significant correlation was observed between nucleotide composition and codon preference. Four introns belonging to the group I intron class were predicted, accounting for about 14.54% of the size of the mitogenomes. Phylogenetic analyses confirmed the positions of T. afroharzianum strains within the genus of Trichoderma and supported a sister group relationship between T. afroharzianum and T. simmonsii. The recovered trees also supported the monophyly of all included families and of the genus of Acremonium. The characterization of mitochondrial genome of T. afroharzianum contributes to the understanding of phylogeny and evolution of Hypocreales.
dc.description.sponsorshipScientific Research Commission of Manisa Celal Bayar University [2020-022]
dc.description.sponsorshipAcknowledgement This study was funded by the Scientific Research Commission of Manisa Celal Bayar University with the grant number 2020-022. We thank the anonymous reviewers for their construc-tive comments and suggestions. We present our gratitude to staff of Sivas Cumhuriyet University Evolutionary Bioinfor-matics Research Group (EBRG) for their helps during labora-tory works. Our thanks also go to Dilara Bakmaz for her help during specifically visualization/data presentation.
dc.identifier.doi10.1139/gen-2022-0092
dc.identifier.endpage150
dc.identifier.issn0831-2796
dc.identifier.issn1480-3321
dc.identifier.issue5
dc.identifier.pmid38118129
dc.identifier.scopus2-s2.0-85192027119
dc.identifier.scopusqualityQ2
dc.identifier.startpage139
dc.identifier.urihttps://doi.org/10.1139/gen-2022-0092
dc.identifier.urihttps://hdl.handle.net/20.500.12418/29747
dc.identifier.volume67
dc.identifier.wosWOS:001156753700001
dc.identifier.wosqualityN/A
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherCanadian Science Publishing
dc.relation.ispartofGenome
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectmitochondrial genome
dc.subjectTrichoderma
dc.subjectHypocreales
dc.subjectgenomic evolution
dc.subjectphylomitogenomics
dc.titleMitogenome evolution in Trichoderma afroharzianum strains: for a better understanding of distinguishing genus
dc.typeArticle

Dosyalar

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
PubMed İndeksli Yayınlar Koleksyonu
Scopus İndeksli Yayınlar Koleksiyonu